Job title
Black Leaders in Cancer PhD Programme (Ke Yuan & John Le Quesne)
Job reference
REQ00367
Date posted
21/10/2024
Application closing date
25/11/2024
Location
Glasgow
Salary
Stipend - £21,000
Package
All tuition fees will be covered
Contractual hours
Blank
Basis
Blank
Job category/type
PhD Students
Attachments
Blank
Job description
Mapping the histomorphological landscape across mouse tumours with self-supervised AI models
Background
Histological assessment of mouse tumor phenotypes plays a crucial role in functional studies. Traditionally, this analysis has relied on manual examination, which is insufficient for modern experimental scales that require the evaluation and quantification of hundreds or even thousands of histology slides. Self-supervised AI models in pathology present an opportunity to significantly improve the efficiency and accuracy of phenotypic assessments in mouse models.
Our group has recently developed the Histomorphological Phenotype Learning (HPL) framework, a self-supervised AI tool designed to detect recurring patterns in pathology slides. This approach has already been successfully applied to several human cancers, uncovering a landscape of previously underappreciated tumor phenotypes. Building on this success, we aim to apply self-supervised AI models to systematically map histologic patterns across multiple cancer types in mouse models. These AI-driven models will not only enhance our understanding of tumor phenotypes but will also facilitate rapid and scalable quantification of histological data, applicable to future experiments as soon as the images are generated.
Research question
The primary goal of this project is to develop self-supervised AI foundation models using mouse pathology slides. These models will be trained to predict molecular characteristics, including mutation profiles, transcriptomic signatures, and proteomic data. Furthermore, we will integrate these multimodal data with human datasets for the purpose of target validation and understanding disease mechanisms. Through this work, we seek to advance the field of pathology by enabling more precise and scalable histological analysis in both preclinical and clinical settings.
Skills/techniques that will be gained