Bioinformatician I (BiNGs Core) - Oncological Sciences

Icahn School of Medicine at Mount Sinai

United States

February 8, 2022

Description

Bioinformatician I (BiNGs Core) - Oncological Sciences

CAROUSELPARAGRAPH

  • New York, New York
  • Research
  • 2749516
  • Icahn School of Medicine at Mount Sinai

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    Job Description

    Strength Through Diversity

    Ground breaking science. Advancing medicine. Healing made personal.

    Roles & Responsibilities:

    We are seeking a junior bioinformatician for cancer research and development position at the TCI newly established Bioinformatics for Next Generation Sequencing core facility (BiNGS). The mission of BiNGS is to enhance scholarship and facilitate research in the TCI community by providing access to state-of-the-art bioinformatics analysis, and training. The BiNGS stuff support a broad range of bioinformatics analyses for multiple applications spanning genomics, transcriptomics and epigenomics research, through standard and custom analysis, data management, bioinfomatics tools development, access to biocomputing resources, and advanced computational training in data analysis. We are focused on delivering a comprehensive, rapid and user- friendly service.

    We are seeking a highly motivated Bioinformatics Scientist who wants the opportunity to significantly impact the growth and success of our cancer research programs, the Bioinformatics core and the service we provide to the TCI investigators. The candidate will work closely with TCI investigators to facilitate and enhance the processing of their projects. Commitment to accuracy, high attention-to-detail, and ability to work independently are critical competencies for the role.

    Job responsibilities will include but not be limited to:

  • Execute computational analysis for RNA-seq and whole genome- and exom- sequencing using existing standard analysis pipelines.
  • Integrate data from publically available resources (e.g. ENCODE, PCAWG, TCGA, ICGC and GTEx).
  • Provide analyses and visualization for presentations and publications.
  • Participate in development of new software tools to process, analyze and visualize high-throughput multidimensional sequencing data.
  • Manage the core online database and interactive tools on local HPC and commercially available clouds preferably Amazon Web Services.
  • Tracking and reporting of ongoing projects.
  • Provide bioinformatic support and training to TCI investigators.
  • Requirements:

  • BSc or MSc in Biology and Bioinformatics
  • Proven experience in analyzing and integrating genomic and transcriptomics data sets.
  • Proven experience with Python, Perl, R and Unix. Additional experience with standard genomics tools for high-throughput sequencing data analysis (e.g. R and DEseq2). Experience with markup languages such as HTML is preferred.
  • Experience in batch HPC cluster environment with a parallel file system.
  • Proven ability to research, analyze, recommend, communicate, and implement solutions.
  • Good understanding of genomics, and technologies such as qPCR and next- generation sequencing.
  • Must be able to work as an individual while part of a small team.
  • Strength Through Diversity

    The Mount Sinai Health System believes that diversity is a driver for excellence. We share a common devotion to delivering exceptional patient care. Yet we're as diverse as the city we call home- culturally, ethically, in outlook and lifestyle. When you join us, you become a part of Mount Sinai's unrivaled record of achievement, education and advancement as we revolutionize medicine together.

    We work hard to acquire and retain the best people, and to create a welcoming, nurturing work environment where you can develop professionally. We share the belief that all employees, regardless of job title or expertise, can make an impact on quality patient care.

    Explore more about this opportunity and how you can help us write a new chapter in our story!

    Who We Are

    Over 38,000 employees strong, the mission of the Mount Sinai Health System is to provide compassionate patient care with seamless coordination and to advance medicine through unrivaled education, research, and outreach in the many diverse communities we serve.

    Formed in September 2013, The Mount Sinai Health System combines the excellence of the Icahn School of Medicine at Mount Sinai with seven premier hospital campuses, including Mount Sinai Beth Israel, Mount Sinai Beth Israel Brooklyn, The Mount Sinai Hospital, Mount Sinai Queens, Mount Sinai West (formerly Mount Sinai Roosevelt), Mount Sinai St. Luke's, and New York Eye and Ear Infirmary of Mount Sinai.

    The Mount Sinai Health System is an equal opportunity employer. We promote recognition and respect for individual and cultural differences, and we work to make our employees feel valued and appreciated, whatever their race, gender, background, or sexual orientation.

    EOE Minorities/Women/Disabled/Veterans

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